Please use this identifier to cite or link to this item:
https://hdl.handle.net/20.500.12348/4838
Quick fish sampling guide for disease diagnostics - Microbiome sampling guide
dc.creator | Delamare-Deboutteville, J. | en_US |
dc.creator | Khor, L. | en_US |
dc.creator | Ali, S.E. | en_US |
dc.creator | Chadag, V. | en_US |
dc.date.accessioned | 2021-08-12T09:31:58Z | |
dc.date.available | 2021-08-12T09:31:58Z | |
dc.date.issued | 2021 | en_US |
dc.identifier.citation | Delamare-Deboutteville J, Khor L, Ali S and Mohan CV. Quick fish sampling guide for disease diagnostics - Microbiome sampling guide. Penang, Malaysia: CGIAR Research Program on Fish Agri-Food Systems. | en_US |
dc.identifier.uri | https://hdl.handle.net/20.500.12348/4838 | |
dc.description.abstract | Interactions between microbes associated with the host, other organisms present in the system and the environment itself are increasingly recognised to contribute to aquatic animal diseases. Those microbiome assemblages and their functions are extremely diverse and poorly understood. They vary over time in water and between host tissues and organs. High-throughput sequencing technologies (multi-omics) and bioinformatics analysis of complex microbiomes can provide biological insights offering new opportunities for early detection of pathogens and disease mitigation strategies. Similarly, such approaches are being applied to study the effect of locally available ingredients for use in fish feeds and their impact on fist gut microbiome and the health of the pond environment—optimising the growing conditions on-farm. WorldFish and partners developed this quick guide for microbiome sampling from fish skin/gills mucus swabs, internal organs (e.g. gut) and water samples from ponds, hatcheries tanks, river, canal etc. | en_US |
dc.format | en_US | |
dc.language | en | en_US |
dc.publisher | WorldFish (WF) | en_US |
dc.rights | CC-BY-NC-4.0 | en_US |
dc.subject | catfish | en_US |
dc.subject | fish sampling | en_US |
dc.subject | disease diagnostics | en_US |
dc.subject | microbiome analysis | en_US |
dc.subject | skin microbiome | en_US |
dc.subject | gill microbiome | en_US |
dc.subject | water microbiome | en_US |
dc.subject | microbial community study | en_US |
dc.subject | Fish | en_US |
dc.title | Quick fish sampling guide for disease diagnostics - Microbiome sampling guide | en_US |
dc.type | Tool | en_US |
cg.contributor.crp | Fish | en_US |
cg.contributor.funder | United States Agency for International Development | en_US |
cg.contributor.funder | WorldFish | en_US |
cg.contributor.funder | Norwegian Agency for Development Cooperation | en_US |
cg.contributor.funder | Big Data in Agriculture | en_US |
cg.contributor.funder | Mississippi State University, Feed the Future Innovation Lab for Fish | en_US |
cg.coverage.region | Global | en_US |
cg.subject.agrovoc | tilapia | en_US |
cg.subject.agrovoc | carp | en_US |
cg.contributor.affiliation | WorldFish | en_US |
cg.contributor.affiliation | University of Ibadan | en_US |
cg.contributor.affiliation | University of Exeter | en_US |
cg.contributor.affiliation | The Norwegian Veterinary Institute | en_US |
cg.contributor.affiliation | Mississippi State University | en_US |
cg.contributor.affiliation | Centre for Environment, Fisheries and Aquaculture Science | en_US |
cg.contributor.affiliation | Mahidol University, Faculty of science, Center of Excellence for Shrimp Molecular Biology and Biotechnology | en_US |
cg.contributor.affiliation | The University of Queensland, School of Biological Sciences | en_US |
cg.identifier.status | Open access | en_US |
cg.contribution.worldfishauthor | Delamare-Deboutteville, J. | en_US |
cg.contribution.worldfishauthor | Khor, L. | en_US |
cg.contribution.worldfishauthor | Ali, S.E. | en_US |
cg.contribution.worldfishauthor | Chadag, V. | en_US |
cg.description.theme | Sustainable aquaculture | en_US |
cg.creator.id | Jerome Delamare-Deboutteville: 0000-0003-4169-2456 | en_US |
cg.creator.id | Shimaa El Sayed Mohamed Ali: 0000-0002-0227-8124 | en_US |
cg.creator.id | Vishnumurthy Mohan Chadag: 0000-0002-2574-284X | en_US |
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Sustainable aquaculture [2738]