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dc.creatorDelamare-Deboutteville, J.en_US
dc.creatorKhor, L.en_US
dc.creatorAli, S.E.en_US
dc.creatorChadag, V.en_US
dc.date.accessioned2021-08-12T09:31:58Z
dc.date.available2021-08-12T09:31:58Z
dc.date.issued2021en_US
dc.identifier.citationDelamare-Deboutteville J, Khor L, Ali S and Mohan CV. Quick fish sampling guide for disease diagnostics - Microbiome sampling guide. Penang, Malaysia: CGIAR Research Program on Fish Agri-Food Systems.en_US
dc.identifier.urihttps://hdl.handle.net/20.500.12348/4838
dc.description.abstractInteractions between microbes associated with the host, other organisms present in the system and the environment itself are increasingly recognised to contribute to aquatic animal diseases. Those microbiome assemblages and their functions are extremely diverse and poorly understood. They vary over time in water and between host tissues and organs. High-throughput sequencing technologies (multi-omics) and bioinformatics analysis of complex microbiomes can provide biological insights offering new opportunities for early detection of pathogens and disease mitigation strategies. Similarly, such approaches are being applied to study the effect of locally available ingredients for use in fish feeds and their impact on fist gut microbiome and the health of the pond environment—optimising the growing conditions on-farm. WorldFish and partners developed this quick guide for microbiome sampling from fish skin/gills mucus swabs, internal organs (e.g. gut) and water samples from ponds, hatcheries tanks, river, canal etc.en_US
dc.formatPDFen_US
dc.languageenen_US
dc.publisherWorldFish (WF)en_US
dc.rightsCC-BY-NC-4.0en_US
dc.subjectcatfishen_US
dc.subjectfish samplingen_US
dc.subjectdisease diagnosticsen_US
dc.subjectmicrobiome analysisen_US
dc.subjectskin microbiomeen_US
dc.subjectgill microbiomeen_US
dc.subjectwater microbiomeen_US
dc.subjectmicrobial community studyen_US
dc.subjectFishen_US
dc.titleQuick fish sampling guide for disease diagnostics - Microbiome sampling guideen_US
dc.typeToolen_US
cg.contributor.crpFISHen_US
cg.contributor.funderUnited States Agency for International Developmenten_US
cg.contributor.funderWorldFishen_US
cg.contributor.funderNorwegian Agency for Development Cooperationen_US
cg.contributor.funderBig Data in Agricultureen_US
cg.contributor.funderMississippi State University, Feed the Future Innovation Lab for Fishen_US
cg.coverage.regionGlobalen_US
cg.subject.agrovoctilapiaen_US
cg.subject.agrovoccarpen_US
cg.contributor.affiliationWorldFishen_US
cg.contributor.affiliationUniversity of Ibadanen_US
cg.contributor.affiliationUniversity of Exeteren_US
cg.contributor.affiliationThe Norwegian Veterinary Instituteen_US
cg.contributor.affiliationMississippi State Universityen_US
cg.contributor.affiliationCentre for Environment, Fisheries and Aquaculture Scienceen_US
cg.contributor.affiliationMahidol University, Faculty of science, Center of Excellence for Shrimp Molecular Biology and Biotechnologyen_US
cg.contributor.affiliationThe University of Queensland, School of Biological Sciencesen_US
cg.identifier.statusOpen accessen_US
cg.contribution.worldfishauthorDelamare-Deboutteville, J.en_US
cg.contribution.worldfishauthorKhor, L.en_US
cg.contribution.worldfishauthorAli, S.E.en_US
cg.contribution.worldfishauthorChadag, V.en_US
cg.description.themeSustainable aquacultureen_US
cg.creator.idJerome Delamare-Deboutteville: 0000-0003-4169-2456en_US
cg.creator.idShimaa El Sayed Mohamed Ali: 0000-0002-0227-8124en_US
cg.creator.idVishnumurthy Mohan Chadag: 0000-0002-2574-284Xen_US


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